{"product_id":"omics-in-plant-breeding-isbn-9781118820995","title":"Omics in Plant Breeding","description":"\u003cp\u003eComputational and high-throughput methods, such as genomics, proteomics, and transcriptomics, known collectively as “-omics,” have been used to study plant biology for well over a decade now. As these technologies mature, plant and crop scientists have started using these methods to improve crop varieties. Omics in Plant Breeding provides a timely introduction to key omicsbased methods and their application in plant breeding.\u003c\/p\u003e \u003cp\u003e\u003ci\u003eOmics in Plant Breeding\u003c\/i\u003e is a practical and accessible overview of specific omics-based methods ranging from metabolomics to phenomics. Covering a single methodology within each chapter, this book provides thorough coverage that ensures a strong understanding of each methodology both in its application to, and improvement of, plant breeding.\u003c\/p\u003e \u003cp\u003eAccessible to advanced students, researchers, and professionals, \u003ci\u003eOmics in Plant Breeding\u003c\/i\u003e will\u003cbr\u003e be an essential entry point into this innovative and exciting field.\u003c\/p\u003e \u003cp\u003e• A valuable overview of high-throughput, genomics-based technologies and their applications to plant breeding\u003c\/p\u003e \u003cp\u003e• Each chapter explores a single methodology, allowing for detailed and thorough coverage\u003c\/p\u003e \u003cp\u003e• Coverage ranges from well-established methodologies, such as genomics and proteomics, to emerging technologies, including phenomics and physionomics\u003c\/p\u003e \u003cp\u003e\u003cb\u003eAluízio Borém\u003c\/b\u003e is a Professor of Plant Breeding at the University of Viçosa in Brazil.\u003c\/p\u003e \u003cp\u003e\u003cb\u003eRoberto Fritsche-Neto\u003c\/b\u003e is a Professor of Genetics and Plant Breeding at the University of São Paulo in Brazil.\u003c\/p\u003e List of Contributors ix \u003cp\u003eForeword xiii\u003c\/p\u003e \u003cp\u003e\u003cb\u003e1 Omics: Opening up the \"Black Box\" of the Phenotype 1\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eRoberto Fritsche-Neto and Aluizio Borem\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eThe Post-Genomics Era 3\u003c\/p\u003e \u003cp\u003eThe Omics in Plant Breeding 4\u003c\/p\u003e \u003cp\u003eGenomics, Precision Genomics, and RNA Interference 5\u003c\/p\u003e \u003cp\u003eTranscriptomics and Proteomics 8\u003c\/p\u003e \u003cp\u003eMetabolomics and Physiognomics 8\u003c\/p\u003e \u003cp\u003ePhenomics 9\u003c\/p\u003e \u003cp\u003eBioinformatics 10\u003c\/p\u003e \u003cp\u003eProspects 10\u003c\/p\u003e \u003cp\u003eReferences 10\u003c\/p\u003e \u003cp\u003e\u003cb\u003e2 Genomics 13\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eAntonio Costa de Oliveira, Luciano Carlos da Maia, Daniel da Rosa Farias, and Naciele Marini\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eThe Rise of Genomics 13\u003c\/p\u003e \u003cp\u003eDNA Sequencing 13\u003c\/p\u003e \u003cp\u003eDevelopment of Sequence-based Markers 18\u003c\/p\u003e \u003cp\u003eGenome Wide Selection (GWS) 25\u003c\/p\u003e \u003cp\u003eStructural and Comparative Genomics 27\u003c\/p\u003e \u003cp\u003eReferences 28\u003c\/p\u003e \u003cp\u003e\u003cb\u003e3 Transcriptomics 33\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eCarolina Munari Rodrigues, Valeria S. Mafra, and Marcos Antonio Machado\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eMethods of Studying the Transcriptome 34\u003c\/p\u003e \u003cp\u003eApplications of Transcriptomics Approaches for Crop Breeding 46\u003c\/p\u003e \u003cp\u003eConclusions and Future Prospects 51\u003c\/p\u003e \u003cp\u003eAcknowledgements 51\u003c\/p\u003e \u003cp\u003eReferences 51\u003c\/p\u003e \u003cp\u003e\u003cb\u003e4 Proteomics 59\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eIlara Gabriela F. Budzinski, Thais Regiani, Monica T. Veneziano Labate, Simone Guidetti-Gonzalez, Danielle Izilda R. da Silva, Maria Juliana Calderan Rodrigues, Janaina de Santana Borges, Ivan Miletovic Mozol, and Carlos Alberto Labate\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eHistory 59\u003c\/p\u003e \u003cp\u003eDifferent Methods for the Extraction of Total Proteins 60\u003c\/p\u003e \u003cp\u003eSubcellular Proteomics 64\u003c\/p\u003e \u003cp\u003ePost-Translational Modifications 66\u003c\/p\u003e \u003cp\u003eQuantitative Proteomics 69\u003c\/p\u003e \u003cp\u003ePerspectives 72\u003c\/p\u003e \u003cp\u003eReferences 73\u003c\/p\u003e \u003cp\u003e\u003cb\u003e5 Metabolomics 81\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eValdir Diola (in memoriam), Danilo de Menezes Daloso, and Werner Camargos Antunes\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eIntroduction 81\u003c\/p\u003e \u003cp\u003eMetabolomic and Biochemical Molecules 83\u003c\/p\u003e \u003cp\u003eTechnologies for Metabolomics 83\u003c\/p\u003e \u003cp\u003eMetabolomic Database Analysis 86\u003c\/p\u003e \u003cp\u003eMetabolomics Applications 89\u003c\/p\u003e \u003cp\u003eMetabolomics-assisted Plant Breeding 91\u003c\/p\u003e \u003cp\u003eAssociative Genome Mapping and mQTL Profiles 95\u003c\/p\u003e \u003cp\u003eLarge-scale Phenotyping Using Metabolomics 97\u003c\/p\u003e \u003cp\u003eConclusion and Outlook 98\u003c\/p\u003e \u003cp\u003eReferences 99\u003c\/p\u003e \u003cp\u003e\u003cb\u003e6 Physionomics 103\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eFrederico Almeida de Jesus, Agustin Zsogon, and Lazaro Eustaquio Pereira Peres\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eIntroduction 103\u003c\/p\u003e \u003cp\u003eEarly Studies on Plant Physiology and the Discovery of Photosynthesis 104\u003c\/p\u003e \u003cp\u003eBiochemical Approaches to Plant Physiology and the Discovery of Plant Hormones 104\u003c\/p\u003e \u003cp\u003eGenetic Approaches to Plant Physiology and the Discovery of Hormone Signal Transduction Pathways 106\u003c\/p\u003e \u003cp\u003eAlternative Genetic Models for Omics Approaches in Plant Physiology 112\u003c\/p\u003e \u003cp\u003e\"Physionomics\" as an Integrator of Various Omics for Functional Studies and Plant Breeding 117\u003c\/p\u003e \u003cp\u003eAcknowledgements 121\u003c\/p\u003e \u003cp\u003eReferences 121\u003c\/p\u003e \u003cp\u003e\u003cb\u003e7 Phenomics 127\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eRoberto Fritsche-Neto, Aluizio Borem, and Joshua N. Cobb\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eIntroduction 127\u003c\/p\u003e \u003cp\u003eExamples of Large-scale Phenotyping 128\u003c\/p\u003e \u003cp\u003eImportant Aspects for Phenomics Implementation 134\u003c\/p\u003e \u003cp\u003eMain Breeding Applications 141\u003c\/p\u003e \u003cp\u003eFinal Considerations 144\u003c\/p\u003e \u003cp\u003eReferences 144\u003c\/p\u003e \u003cp\u003e\u003cb\u003e8 Electrophoresis, Chromatography, and Mass Spectrometry 147\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eThais Regiani, Ilara Gabriela F. Budzinski, Simone Guidetti-Gonzalez, Monica T. Veneziano Labate, Fernando Cotinguiba, Felipe G. Marques, Fabricio E. Moraes, and Carlos Alberto Labate\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eIntroduction 147\u003c\/p\u003e \u003cp\u003eTwo-dimensional Electrophoresis (2DE) 148\u003c\/p\u003e \u003cp\u003eChromatography 150\u003c\/p\u003e \u003cp\u003eMass Spectrometry 155\u003c\/p\u003e \u003cp\u003eData Analysis 161\u003c\/p\u003e \u003cp\u003eReferences 164\u003c\/p\u003e \u003cp\u003e\u003cb\u003e9 Bioinformatics 167\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eJ. Miguel Ortega and Fabricio R. Santos\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eIntroduction 167\u003c\/p\u003e \u003cp\u003eThe \"Omics\" Megadata and Bioinformatics 167\u003c\/p\u003e \u003cp\u003eHardware for Modern Bioinformatics 169\u003c\/p\u003e \u003cp\u003eSoftware for Genomic Sequencing 170\u003c\/p\u003e \u003cp\u003eSoftware for Contig Assembling 172\u003c\/p\u003e \u003cp\u003eAssembly Using the Graph Theory 173\u003c\/p\u003e \u003cp\u003eNew Approaches in Bioinformatics for DNA and RNA Sequencing 174\u003c\/p\u003e \u003cp\u003eDatabases, Identification of Homologous Sequences and Functional Annotation 175\u003c\/p\u003e \u003cp\u003eAnnotation of a Complete Genome 179\u003c\/p\u003e \u003cp\u003eComputational System with Chained Tasks Manager (Workflow) 181\u003c\/p\u003e \u003cp\u003eApplications for Studies in Plants 182\u003c\/p\u003e \u003cp\u003eFinal Considerations 183\u003c\/p\u003e \u003cp\u003eReferences 184\u003c\/p\u003e \u003cp\u003e\u003cb\u003e10 Precision Genetic Engineering 187\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eThiago J. Nakayama, Aluizio Borem, Lucimara Chiari, Hugo Bruno Correa Molinari, and Alexandre Lima Nepomuceno\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eIntroduction 187\u003c\/p\u003e \u003cp\u003eZinc Finger Nucleases (ZFNs) 190\u003c\/p\u003e \u003cp\u003eTranscription Activator-like Effector Nucleases (TALENs) 193\u003c\/p\u003e \u003cp\u003eMeganucleases (LHEs: LAGLIDADG Homing Endonucleases) 194\u003c\/p\u003e \u003cp\u003eClustered Regularly Interspaced Short Palindromic Repeats (CRISPR) 195\u003c\/p\u003e \u003cp\u003eImplications and Perspectives of the use of PGE in Plant Breeding 197\u003c\/p\u003e \u003cp\u003eReferences 202\u003c\/p\u003e \u003cp\u003e\u003cb\u003e11 RNA Interference 207\u003c\/b\u003e\u003cbr\u003e\u003ci\u003eFrancisco J.L. Aragao, Abdulrazak B. Ibrahim, and Maria Laine P. Tinoco\u003c\/i\u003e\u003c\/p\u003e \u003cp\u003eIntroduction 207\u003c\/p\u003e \u003cp\u003eDiscovery of RNAi 208\u003c\/p\u003e \u003cp\u003eMechanism of RNA Interference 209\u003c\/p\u003e \u003cp\u003eApplications in Plant Breeding: Naturally Occurring Gene Silencing and Modification by Genetic Engineering 211\u003c\/p\u003e \u003cp\u003eResistance to Viruses 215\u003c\/p\u003e \u003cp\u003eHost-induced Gene Silencing 218\u003c\/p\u003e \u003cp\u003eInsect and Disease Control 218\u003c\/p\u003e \u003cp\u003eImproving Nutritional Values 219\u003c\/p\u003e \u003cp\u003eSecondary Metabolites 220\u003c\/p\u003e \u003cp\u003ePerspectives 220\u003c\/p\u003e \u003cp\u003eReferences 222\u003c\/p\u003e \u003cp\u003eIndex 229\u003c\/p\u003e \u003cp\u003e“Accessible to advanced students, researchers, and professionals, Omics in Plant Breeding will be an essential entry point into this innovative and exciting field.”  (\u003ci\u003eBiotechnology, Agronomy, Society and Environment\u003c\/i\u003e, 1 October 2014)\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e\u003cb\u003eAluzio Borem de Olieviera\u003c\/b\u003e is a Professor of Crop Science at the University of Viçosa in Brazil. Prof. Borem received his Ph.D from the University of Minnesota. He has written, or contributed to, more than 50 books in his career.\u003c\/p\u003e \u003cp\u003e\u003cb\u003eRoberto Fritsche-Neto\u003c\/b\u003e is an Adjunct Professor of Crop Science at the University of Viçosa in Brazil. Dr. Fritsche-Neto has co-edited two volumes, \u003ci\u003ePlant Breeding for Biotic Stress Resistance\u003c\/i\u003e and \u003ci\u003ePlant Breeding for Abiotic Stress Resistance\u003c\/i\u003e. Both published by Springer in 2012.\u003c\/p\u003e  \u003cp\u003eComputational and high-throughput methods, such as genomics, proteomics, and transcriptomics, known collectively as “-omics,” have been used to study plant biology for well over a decade now. As these technologies mature, plant and crop scientists have started using these methods to improve crop varieties. Omics in Plant Breeding provides a timely introduction to key omicsbased methods and their application in plant breeding.\u003c\/p\u003e \u003cp\u003e\u003ci\u003eOmics in Plant Breeding\u003c\/i\u003e is a practical and accessible overview of specific omics-based methods ranging from metabolomics to phenomics. Covering a single methodology within each chapter, this book provides thorough coverage that ensures a strong understanding of each methodology both in its application to, and improvement of, plant breeding.\u003c\/p\u003e \u003cp\u003eAccessible to advanced students, researchers, and professionals, \u003ci\u003eOmics in Plant Breeding\u003c\/i\u003e will\u003cbr\u003e be an essential entry point into this innovative and exciting field.\u003c\/p\u003e \u003cp\u003e• A valuable overview of high-throughput, genomics-based technologies and their applications to plant breeding\u003c\/p\u003e \u003cp\u003e• Each chapter explores a single methodology, allowing for detailed and thorough coverage\u003c\/p\u003e \u003cp\u003e• Coverage ranges from well-established methodologies, such as genomics and proteomics, to emerging technologies, including phenomics and physionomics\u003c\/p\u003e \u003cp\u003e\u003cb\u003eAluízio Borém\u003c\/b\u003e is a Professor of Plant Breeding at the University of Viçosa in Brazil.\u003c\/p\u003e \u003cp\u003e\u003cb\u003eRoberto Fritsche-Neto\u003c\/b\u003e is a Professor of Genetics and Plant Breeding at the University of São Paulo in Brazil.\u003c\/p\u003e","brand":"Wiley-Blackwell","offers":[{"title":"Default Title","offer_id":47989711995109,"sku":"NP9781118820995","price":115.95,"currency_code":"USD","in_stock":false}],"thumbnail_url":"\/\/cdn.shopify.com\/s\/files\/1\/1842\/7735\/files\/9781118820995.jpg?v=1761785207","url":"https:\/\/k12savings.com\/products\/omics-in-plant-breeding-isbn-9781118820995","provider":"K12savings","version":"1.0","type":"link"}